I just checked the two photos with the old and new light board, I have connected the wires correctly. Any wires that are the same color were numbered so the correct order was used when installing the new board.
Old Board:
New Board:
Which wires should I try swapping or is there something else I can do to troubleshoot this?
Cannot really tell Derek as the wire colors are no give away to where they go.
Trace each wire to its origin and confirm.
PAD 1 goes to right channel output.
PAD 2 goes to the attenuator switch blue wire (this looks correct in your photo)
PAD 3 goes to attenuator switch ground, the crossbar orange wire between switch poles. (this looks correct in your photo)
PAD 4 goes to the ground bus bar between the 2 big capacitors.
PAD 5 goes to the attenuator switch yellow wire (this looks correct in your photo)
PAD 16 goes to left channel output.
PAD 14 goes to the AC transformer low voltage secondary
PAD 15 goes to the AC transformer low voltage secondary
Thus the wires you need to trace back are PAD1, PAD4, PAD16, PAD14, PAD15