Alex SE.... this latter plot of yours is making me thinking about something else...
Don't know if what I am going to say here can apply or not... but I remember such kind of filtering on the bass while experimenting with some external filters added at decks' inputs and outputs to be able to record Cr tapes at 120microseconds (as suggested by Alex/ANT at that other place in the past) when decks used to have different input or output impedances...
I understand that, maybe, impedance mismatches between devices should only change the levels but, hey, if there is some kind of (unwanted) capacitance in the middle then also the response will change and, usually, just with similar shapes as you are showing there in your latest plot, making the impedance mismatches joined with some capacitance acting just like EQ filters.
At this point, it might be interesting to measure the input and output impedances of your soundcard and your decks.
Anyways, it's just a wild guess... because, really, I don't know which your exact problem actually is.